Bradi1g07090.1

Description : pentatricopeptide (PPR) repeat-containing protein

Gene families : OG_01_0012847 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012847_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi1g07090.1
Cluster	Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_1

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR045215	PPR_prot_At1g15510	PANTHER	38	793
IPR002885	Pentatricopeptide_rpt	Pfam	569	594
IPR002885	Pentatricopeptide_rpt	Pfam	230	257
IPR002885	Pentatricopeptide_rpt	Pfam	128	158
IPR002885	Pentatricopeptide_rpt	Pfam	260	287
IPR002885	Pentatricopeptide_rpt	Pfam	97	125
IPR002885	Pentatricopeptide_rpt	Pfam	334	354
IPR002885	Pentatricopeptide_rpt	Pfam	201	227
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	95	125
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	373	658
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	362	392
IPR011990	TPR-like_helical_dom_sf	Gene3D	23	190
IPR011990	TPR-like_helical_dom_sf	Gene3D	447	774
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	126	160
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	632	666
IPR002885	Pentatricopeptide_rpt	TIGRFAM	201	228
IPR002885	Pentatricopeptide_rpt	TIGRFAM	497	530
IPR002885	Pentatricopeptide_rpt	TIGRFAM	97	125
IPR002885	Pentatricopeptide_rpt	TIGRFAM	128	161
IPR002885	Pentatricopeptide_rpt	TIGRFAM	364	395
IPR002885	Pentatricopeptide_rpt	TIGRFAM	395	428
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	393	427
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	495	529
IPR011990	TPR-like_helical_dom_sf	Gene3D	255	319
IPR032867	DYW_dom	Pfam	669	792
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	98	658
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	227	261
IPR002885	Pentatricopeptide_rpt	Pfam	392	440
IPR002885	Pentatricopeptide_rpt	Pfam	495	541
IPR011990	TPR-like_helical_dom_sf	Gene3D	320	446

No CAZYmes available for this sequence

External Links

No external refs found!