Sevir.2G332300.1

Description : chromatin remodeling 4

Gene families : OG_01_0005048 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005048_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G332300.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G332300.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_158
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_2

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	ISM	GOs from InterProScan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR014001	Helicase_ATP-bd	ProSiteProfiles	675	852
IPR011011	Znf_FYVE_PHD	SUPERFAMILY	72	124
IPR027417	P-loop_NTPase	Gene3D	897	1124
IPR001650	Helicase_C	Pfam	982	1093
IPR001650	Helicase_C	ProSiteProfiles	982	1141
IPR016197	Chromo-like_dom_sf	SUPERFAMILY	565	625
IPR019786	Zinc_finger_PHD-type_CS	ProSitePatterns	78	119
IPR000953	Chromo/chromo_shadow_dom	ProSiteProfiles	508	559
IPR038718	SNF2-like_sf	Gene3D	654	896
IPR009463	DUF1087	SMART	1253	1318
IPR016197	Chromo-like_dom_sf	SUPERFAMILY	506	560
IPR027417	P-loop_NTPase	SUPERFAMILY	889	1140
IPR019787	Znf_PHD-finger	ProSiteProfiles	75	122
IPR000330	SNF2_N	Pfam	681	956
IPR014001	Helicase_ATP-bd	SMART	659	863
IPR009463	DUF1087	Pfam	1262	1311
IPR019787	Znf_PHD-finger	Pfam	78	121
IPR023780	Chromo_domain	Pfam	575	624
IPR009057	Homeobox-like_sf	SUPERFAMILY	1686	1736
IPR001005	SANT/Myb	ProSiteProfiles	1682	1734
IPR013083	Znf_RING/FYVE/PHD	Gene3D	68	121
IPR001650	Helicase_C	SMART	1008	1093
IPR001965	Znf_PHD	SMART	77	120
IPR027417	P-loop_NTPase	SUPERFAMILY	640	887
IPR000953	Chromo/chromo_shadow_dom	SMART	571	628
IPR000953	Chromo/chromo_shadow_dom	SMART	349	561

No CAZYmes available for this sequence

External Links

No external refs found!