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  5. Bradi1g15820.4

Bradi1g15820.4


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0011422 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011422_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi1g15820.4
Cluster Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_128


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 561 679
IPR011990 TPR-like_helical_dom_sf Gene3D 680 781
IPR011990 TPR-like_helical_dom_sf Gene3D 53 177
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 602 636
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 768 802
IPR002885 Pentatricopeptide_rpt Pfam 802 851
IPR002885 Pentatricopeptide_rpt Pfam 701 744
IPR002885 Pentatricopeptide_rpt Pfam 428 475
IPR002885 Pentatricopeptide_rpt Pfam 184 229
IPR002885 Pentatricopeptide_rpt Pfam 322 370
IPR002885 Pentatricopeptide_rpt Pfam 601 648
IPR002885 Pentatricopeptide_rpt Pfam 496 545
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 733 767
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 532 566
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 392 426
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 146 180
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 462 496
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 497 531
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 322 356
IPR002885 Pentatricopeptide_rpt Pfam 149 177
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 838 872
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 251 285
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 216 250
IPR002885 Pentatricopeptide_rpt Pfam 387 420
IPR002885 Pentatricopeptide_rpt Pfam 281 313
IPR002885 Pentatricopeptide_rpt Pfam 765 794
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 698 732
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 803 837
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 286 316
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 873 907
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 181 215
IPR002885 Pentatricopeptide_rpt Pfam 860 907
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 427 461
IPR011990 TPR-like_helical_dom_sf Gene3D 316 387
IPR011990 TPR-like_helical_dom_sf Gene3D 178 245
IPR011990 TPR-like_helical_dom_sf Gene3D 491 560
IPR011990 TPR-like_helical_dom_sf Gene3D 246 315
IPR011990 TPR-like_helical_dom_sf Gene3D 416 490
IPR002885 Pentatricopeptide_rpt TIGRFAM 604 637
IPR002885 Pentatricopeptide_rpt TIGRFAM 876 907
IPR002885 Pentatricopeptide_rpt TIGRFAM 770 804
IPR002885 Pentatricopeptide_rpt TIGRFAM 805 839
IPR002885 Pentatricopeptide_rpt TIGRFAM 499 532
IPR002885 Pentatricopeptide_rpt TIGRFAM 219 251
IPR002885 Pentatricopeptide_rpt TIGRFAM 430 463
IPR002885 Pentatricopeptide_rpt TIGRFAM 288 322
IPR002885 Pentatricopeptide_rpt TIGRFAM 535 568
IPR002885 Pentatricopeptide_rpt TIGRFAM 184 216
IPR002885 Pentatricopeptide_rpt TIGRFAM 253 287
IPR002885 Pentatricopeptide_rpt TIGRFAM 394 425
IPR002885 Pentatricopeptide_rpt TIGRFAM 324 357
IPR002885 Pentatricopeptide_rpt TIGRFAM 360 382
IPR002885 Pentatricopeptide_rpt TIGRFAM 149 177
IPR002885 Pentatricopeptide_rpt TIGRFAM 464 497
IPR002885 Pentatricopeptide_rpt TIGRFAM 735 768
IPR002885 Pentatricopeptide_rpt TIGRFAM 840 873
IPR002885 Pentatricopeptide_rpt TIGRFAM 700 733
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 357 391
IPR011990 TPR-like_helical_dom_sf Gene3D 782 935
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 156 877

No CAZYmes available for this sequence

No external refs found!