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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0008395 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008395_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi1g22890.3 | |
| Cluster | Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_28 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 145 | 404 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 178 | 207 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 421 | 455 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 226 | 328 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 639 | 759 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 94 | 225 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 491 | 525 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 409 | 467 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 339 | 398 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 587 | 642 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 268 | 329 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 210 | 245 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 634 | 666 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 178 | 209 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 668 | 702 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 600 | 630 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 459 | 492 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 494 | 527 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 353 | 386 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 248 | 281 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 423 | 455 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 703 | 737 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 318 | 352 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 283 | 317 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 388 | 422 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 281 | 315 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 701 | 735 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 631 | 665 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 441 | 575 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 334 | 440 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 316 | 350 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 731 | 755 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 246 | 280 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 456 | 490 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 386 | 420 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 490 | 539 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 665 | 712 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 211 | 258 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 666 | 700 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 175 | 209 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 351 | 385 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 596 | 630 |
No CAZYmes available for this sequence
| No external refs found! |