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Description : Pentatricopeptide repeat (PPR-like) superfamily protein
Gene families : OG_01_0015163 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015163_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi1g28870.5 | |
| Cluster | Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_28 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 550 | 584 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 515 | 549 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 340 | 374 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 445 | 479 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 444 | 490 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 585 | 632 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 306 | 351 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 410 | 444 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 480 | 514 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 284 | 385 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 155 | 283 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 386 | 497 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 274 | 295 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 305 | 339 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 578 | 653 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 500 | 577 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 375 | 409 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 585 | 619 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 620 | 654 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 414 | 446 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 588 | 621 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 553 | 585 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 343 | 375 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 622 | 655 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 517 | 550 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 308 | 341 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 447 | 480 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 483 | 516 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 378 | 410 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 504 | 563 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 363 | 423 |
No CAZYmes available for this sequence
| No external refs found! |