Bradi1g37130.6

Description : pre-mRNA-processing protein 40A

Gene families : OG_01_0000917 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000917_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi1g37130.6
Cluster	Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_104

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045292	mRNA cis splicing, via spliceosome	ISM	GOs from InterProScan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036517	FF_domain_sf	SUPERFAMILY	557	626
IPR001202	WW_dom	ProSiteProfiles	224	257
IPR036517	FF_domain_sf	Gene3D	766	839
IPR002713	FF_domain	ProSiteProfiles	772	827
IPR036517	FF_domain_sf	Gene3D	430	485
IPR001202	WW_dom	ProSitePatterns	189	214
IPR001202	WW_dom	ProSiteProfiles	183	216
IPR001202	WW_dom	Pfam	229	255
IPR001202	WW_dom	Pfam	187	214
IPR001202	WW_dom	SMART	225	257
IPR001202	WW_dom	SMART	184	216
IPR036517	FF_domain_sf	SUPERFAMILY	491	558
IPR036517	FF_domain_sf	SUPERFAMILY	421	485
IPR002713	FF_domain	ProSiteProfiles	430	484
IPR036517	FF_domain_sf	Gene3D	486	560
IPR036517	FF_domain_sf	Gene3D	561	628
IPR036517	FF_domain_sf	Gene3D	629	711
IPR002713	FF_domain	Pfam	641	696
IPR002713	FF_domain	Pfam	432	481
IPR002713	FF_domain	Pfam	570	616
IPR002713	FF_domain	Pfam	499	549
IPR039726	Prp40-like	PANTHER	4	994
IPR001202	WW_dom	CDD	230	257
IPR036517	FF_domain_sf	SUPERFAMILY	774	834
IPR036020	WW_dom_sf	SUPERFAMILY	217	259
IPR001202	WW_dom	CDD	188	216
IPR002713	FF_domain	ProSiteProfiles	638	700
IPR036020	WW_dom_sf	SUPERFAMILY	188	222
IPR002713	FF_domain	ProSiteProfiles	497	552
IPR002713	FF_domain	SMART	565	619
IPR002713	FF_domain	SMART	497	552
IPR002713	FF_domain	SMART	772	827
IPR002713	FF_domain	SMART	639	700
IPR002713	FF_domain	SMART	430	484
IPR002713	FF_domain	ProSiteProfiles	558	619
IPR036517	FF_domain_sf	SUPERFAMILY	632	707

No CAZYmes available for this sequence

External Links

No external refs found!