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  5. Bradi1g46560.1

Bradi1g46560.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0005330 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005330_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi1g46560.1
Cluster Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_228


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 355 394
IPR002885 Pentatricopeptide_rpt Pfam 460 519
IPR002885 Pentatricopeptide_rpt Pfam 286 345
IPR002885 Pentatricopeptide_rpt Pfam 845 903
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 438 472
IPR011990 TPR-like_helical_dom_sf Gene3D 395 650
IPR011990 TPR-like_helical_dom_sf Gene3D 280 394
IPR011990 TPR-like_helical_dom_sf Gene3D 1045 1198
IPR011990 TPR-like_helical_dom_sf Gene3D 754 860
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 892 926
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 508 542
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 1032 1066
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 473 507
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 683 825
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 261 297
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 403 437
IPR011990 TPR-like_helical_dom_sf Gene3D 159 279
IPR011990 TPR-like_helical_dom_sf Gene3D 861 976
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 1067 1101
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 299 468
IPR002885 Pentatricopeptide_rpt Pfam 227 271
IPR002885 Pentatricopeptide_rpt Pfam 404 450
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 857 891
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 927 961
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 997 1031
IPR002885 Pentatricopeptide_rpt TIGRFAM 440 473
IPR002885 Pentatricopeptide_rpt TIGRFAM 931 963
IPR002885 Pentatricopeptide_rpt TIGRFAM 229 261
IPR002885 Pentatricopeptide_rpt TIGRFAM 300 333
IPR002885 Pentatricopeptide_rpt TIGRFAM 1106 1137
IPR002885 Pentatricopeptide_rpt TIGRFAM 965 996
IPR002885 Pentatricopeptide_rpt TIGRFAM 1000 1032
IPR002885 Pentatricopeptide_rpt TIGRFAM 1035 1067
IPR002885 Pentatricopeptide_rpt TIGRFAM 895 927
IPR002885 Pentatricopeptide_rpt TIGRFAM 475 508
IPR002885 Pentatricopeptide_rpt TIGRFAM 336 369
IPR002885 Pentatricopeptide_rpt TIGRFAM 720 752
IPR002885 Pentatricopeptide_rpt TIGRFAM 405 439
IPR002885 Pentatricopeptide_rpt TIGRFAM 864 892
IPR002885 Pentatricopeptide_rpt TIGRFAM 790 822
IPR002885 Pentatricopeptide_rpt TIGRFAM 370 402
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 787 821
IPR033443 PPR_long Pfam 948 1074
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 717 751
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 368 402
IPR002885 Pentatricopeptide_rpt Pfam 790 818
IPR002885 Pentatricopeptide_rpt Pfam 1106 1134
IPR002885 Pentatricopeptide_rpt Pfam 721 749
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 226 260
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 962 996
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 333 367
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 298 332
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 1102 1136

No CAZYmes available for this sequence

No external refs found!