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  5. Sevir.2G368500.4

Sevir.2G368500.4


Description : CCCH-type zinc finger protein with ARM repeat domain


Gene families : OG_01_0008081 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008081_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G368500.4
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G368500.4
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_12
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_87


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002110 Ankyrin_rpt ProSiteProfiles 73 97
IPR045234 Unkempt-like PANTHER 21 676
IPR036770 Ankyrin_rpt-contain_sf Gene3D 24 154
IPR002110 Ankyrin_rpt Pfam 73 140
IPR036855 Znf_CCCH_sf SUPERFAMILY 279 307
IPR000571 Znf_CCCH SMART 278 305
IPR000571 Znf_CCCH SMART 314 337
IPR002110 Ankyrin_rpt PRINTS 127 141
IPR002110 Ankyrin_rpt PRINTS 109 124
IPR002110 Ankyrin_rpt ProSiteProfiles 108 143
IPR036770 Ankyrin_rpt-contain_sf SUPERFAMILY 71 151
IPR002110 Ankyrin_rpt SMART 108 140
IPR002110 Ankyrin_rpt SMART 73 103
IPR000571 Znf_CCCH ProSiteProfiles 278 306
IPR000571 Znf_CCCH Pfam 282 304

No CAZYmes available for this sequence

No external refs found!