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  5. Sevir.2G385500.1

Sevir.2G385500.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0008395 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008395_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G385500.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G385500.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_55
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_74


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 258 292
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 222 257
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 538 572
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 678 712
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 503 537
IPR011990 TPR-like_helical_dom_sf Gene3D 452 580
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 187 221
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 293 327
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 713 747
IPR011990 TPR-like_helical_dom_sf Gene3D 345 451
IPR011990 TPR-like_helical_dom_sf Gene3D 695 787
IPR002885 Pentatricopeptide_rpt TIGRFAM 646 678
IPR002885 Pentatricopeptide_rpt TIGRFAM 680 714
IPR002885 Pentatricopeptide_rpt TIGRFAM 400 434
IPR002885 Pentatricopeptide_rpt TIGRFAM 365 398
IPR002885 Pentatricopeptide_rpt TIGRFAM 435 467
IPR002885 Pentatricopeptide_rpt TIGRFAM 471 504
IPR002885 Pentatricopeptide_rpt TIGRFAM 295 329
IPR002885 Pentatricopeptide_rpt TIGRFAM 751 771
IPR002885 Pentatricopeptide_rpt TIGRFAM 330 364
IPR002885 Pentatricopeptide_rpt TIGRFAM 260 293
IPR002885 Pentatricopeptide_rpt TIGRFAM 612 640
IPR002885 Pentatricopeptide_rpt TIGRFAM 190 221
IPR002885 Pentatricopeptide_rpt TIGRFAM 715 749
IPR002885 Pentatricopeptide_rpt TIGRFAM 506 539
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 156 411
IPR002885 Pentatricopeptide_rpt Pfam 674 706
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 643 677
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 363 397
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 433 467
IPR002885 Pentatricopeptide_rpt Pfam 351 410
IPR002885 Pentatricopeptide_rpt Pfam 246 306
IPR002885 Pentatricopeptide_rpt Pfam 597 654
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 328 362
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 748 778
IPR002885 Pentatricopeptide_rpt Pfam 502 551
IPR002885 Pentatricopeptide_rpt Pfam 432 479
IPR002885 Pentatricopeptide_rpt Pfam 712 761
IPR002885 Pentatricopeptide_rpt Pfam 186 233
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 398 432
IPR011990 TPR-like_helical_dom_sf Gene3D 581 689
IPR011990 TPR-like_helical_dom_sf Gene3D 238 341
IPR011990 TPR-like_helical_dom_sf Gene3D 105 237
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 468 502

No CAZYmes available for this sequence

No external refs found!