Sevir.2G392000.1

Description : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain

Gene families : OG_01_0006643 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006643_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G392000.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G392000.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_215
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_34

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	278	386
IPR000504	RRM_dom	ProSiteProfiles	302	379
IPR032710	NTF2-like_dom_sf	SUPERFAMILY	13	132
IPR000504	RRM_dom	Pfam	304	362
IPR018222	Nuclear_transport_factor_2_euk	CDD	13	133
IPR000504	RRM_dom	SMART	303	375
IPR039539	Ras_GTPase_bind_prot	PANTHER	1	503
IPR002075	NTF2_dom	Pfam	17	131
IPR018222	Nuclear_transport_factor_2_euk	ProSiteProfiles	17	132
IPR035979	RBD_domain_sf	SUPERFAMILY	278	381

No CAZYmes available for this sequence

External Links

No external refs found!