Bradi2g21217.5

Description : global transcription factor group B1

Gene families : OG_01_0001900 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001900_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi2g21217.5
Cluster	Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_65

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	ISM	GOs from InterProScan
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032784	regulation of DNA-templated transcription elongation	None	Extended
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	None	Extended
BP	GO:0032968	positive regulation of transcription elongation by RNA polymerase II	ISM	GOs from InterProScan
BP	GO:0034243	regulation of transcription elongation by RNA polymerase II	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036860	SH2_dom_sf	Gene3D	1354	1445
IPR012340	NA-bd_OB-fold	SUPERFAMILY	1130	1213
IPR023319	Tex-like_HTH_dom_sf	Gene3D	308	488
IPR023323	Tex-like_dom_sf	Gene3D	489	943
IPR017072	TF_Spt6	PANTHER	91	1593
IPR035018	Spt6_SH2_C	CDD	1354	1441
IPR042066	Spt6_death-like	Gene3D	1017	1110
IPR041692	HHH_9	Pfam	1023	1054
IPR036860	SH2_dom_sf	SUPERFAMILY	1259	1345
IPR036860	SH2_dom_sf	SUPERFAMILY	1391	1442
IPR028231	Spt6_YqgF	Pfam	751	905
IPR035019	Spt6_SH2_N	CDD	1256	1344
IPR010994	RuvA_2-like	SUPERFAMILY	920	1009
IPR028083	Spt6_acidic_N_dom	Pfam	40	136
IPR037027	YqgF/RNaseH-like_dom_sf	Gene3D	735	1130
IPR010994	RuvA_2-like	SUPERFAMILY	1022	1112
IPR036860	SH2_dom_sf	Gene3D	1242	1352
IPR017072	TF_Spt6	PIRSF	3	1495
IPR012337	RNaseH-like_sf	SUPERFAMILY	750	905
IPR006641	YqgF/RNaseH-like_dom	SMART	750	868
IPR003029	S1_domain	ProSiteProfiles	1137	1207
IPR035420	Spt6_SH2	Pfam	1227	1440
IPR032706	Spt6_HHH	Pfam	909	1008

No CAZYmes available for this sequence

External Links

No external refs found!

Bradi2g21217.5

Expression Profile

Co-expression Networks

Functional Annotation