Sevir.2G431800.7

Description : chromatin remodeling 5

Gene families : OG_01_0002357 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002357_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G431800.7
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G431800.7
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_92
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_2

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	ISM	GOs from InterProScan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001650	Helicase_C	SMART	930	1014
IPR014001	Helicase_ATP-bd	ProSiteProfiles	597	769
IPR001650	Helicase_C	ProSiteProfiles	904	1055
IPR001650	Helicase_C	Pfam	902	1014
IPR027417	P-loop_NTPase	Gene3D	816	1045
IPR025260	CHD1-like_C	Pfam	1492	1592
IPR000953	Chromo/chromo_shadow_dom	ProSiteProfiles	380	468
IPR000953	Chromo/chromo_shadow_dom	ProSiteProfiles	493	549
IPR014001	Helicase_ATP-bd	SMART	581	784
IPR038718	SNF2-like_sf	Gene3D	576	815
IPR027417	P-loop_NTPase	SUPERFAMILY	809	1093
IPR025260	CHD1-like_C	SMART	1482	1593
IPR000953	Chromo/chromo_shadow_dom	SMART	378	461
IPR000953	Chromo/chromo_shadow_dom	SMART	491	550
IPR000330	SNF2_N	Pfam	604	873
IPR016197	Chromo-like_dom_sf	SUPERFAMILY	377	460
IPR016197	Chromo-like_dom_sf	SUPERFAMILY	472	548
IPR027417	P-loop_NTPase	SUPERFAMILY	573	806
IPR023780	Chromo_domain	Pfam	494	548

No CAZYmes available for this sequence

External Links

No external refs found!