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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0010848 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010848_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi2g28390.1 | |
| Cluster | Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_134 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 410 | 444 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 471 | 648 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 336 | 470 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 374 | 423 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 483 | 526 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 445 | 479 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 546 | 578 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 375 | 409 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 340 | 374 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 554 | 584 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 413 | 444 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 517 | 552 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 343 | 376 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 448 | 480 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 239 | 268 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 483 | 515 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 377 | 411 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 309 | 335 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 343 | 371 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 309 | 335 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 276 | 303 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 239 | 268 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 448 | 477 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 178 | 335 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 515 | 550 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 551 | 585 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 480 | 514 |
No CAZYmes available for this sequence
| No external refs found! |