1. Home
  2. Species
  3. Setaria viridis
  4. Sequence
  5. Sevir.2G433600.1

Sevir.2G433600.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0012661 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012661_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G433600.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G433600.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_59
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_25


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 301 326
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 154 188
IPR011990 TPR-like_helical_dom_sf Gene3D 260 395
IPR011990 TPR-like_helical_dom_sf Gene3D 110 235
IPR002885 Pentatricopeptide_rpt TIGRFAM 192 224
IPR002885 Pentatricopeptide_rpt TIGRFAM 298 328
IPR002885 Pentatricopeptide_rpt TIGRFAM 158 189
IPR002885 Pentatricopeptide_rpt TIGRFAM 227 254
IPR033443 PPR_long Pfam 167 279
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 189 223
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 259 293
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 224 258
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 294 328

No CAZYmes available for this sequence

No external refs found!