Sevir.2G438200.1

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_01_0011252 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011252_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G438200.1	No neighbors in network
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G438200.1
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_49

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011990	TPR-like_helical_dom_sf	Gene3D	275	369
IPR011990	TPR-like_helical_dom_sf	Gene3D	487	721
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	519	553
IPR011990	TPR-like_helical_dom_sf	Gene3D	82	170
IPR011990	TPR-like_helical_dom_sf	Gene3D	171	274
IPR011990	TPR-like_helical_dom_sf	Gene3D	370	477
IPR002885	Pentatricopeptide_rpt	TIGRFAM	522	554
IPR002885	Pentatricopeptide_rpt	TIGRFAM	190	220
IPR002885	Pentatricopeptide_rpt	TIGRFAM	420	446
IPR002885	Pentatricopeptide_rpt	TIGRFAM	594	618
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	417	447
IPR002885	Pentatricopeptide_rpt	Pfam	416	461
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	187	221
IPR045215	PPR_prot_At1g15510	PANTHER	38	444
IPR045215	PPR_prot_At1g15510	PANTHER	447	543
IPR045215	PPR_prot_At1g15510	PANTHER	531	743
IPR002885	Pentatricopeptide_rpt	Pfam	522	551
IPR002885	Pentatricopeptide_rpt	Pfam	494	514
IPR002885	Pentatricopeptide_rpt	Pfam	594	618
IPR002885	Pentatricopeptide_rpt	Pfam	220	250
IPR002885	Pentatricopeptide_rpt	Pfam	190	217
IPR002885	Pentatricopeptide_rpt	Pfam	295	321
IPR002885	Pentatricopeptide_rpt	Pfam	391	411

No CAZYmes available for this sequence

External Links

No external refs found!