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  5. Bradi2g38440.4

Bradi2g38440.4


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0003152 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003152_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi2g38440.4
Cluster Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_223


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 612 646
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 261 295
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 189 219
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 401 435
IPR002885 Pentatricopeptide_rpt TIGRFAM 720 752
IPR002885 Pentatricopeptide_rpt TIGRFAM 579 612
IPR002885 Pentatricopeptide_rpt TIGRFAM 511 535
IPR002885 Pentatricopeptide_rpt TIGRFAM 614 647
IPR002885 Pentatricopeptide_rpt TIGRFAM 263 296
IPR002885 Pentatricopeptide_rpt TIGRFAM 120 153
IPR002885 Pentatricopeptide_rpt TIGRFAM 368 401
IPR002885 Pentatricopeptide_rpt TIGRFAM 439 472
IPR002885 Pentatricopeptide_rpt TIGRFAM 228 262
IPR002885 Pentatricopeptide_rpt TIGRFAM 298 331
IPR002885 Pentatricopeptide_rpt TIGRFAM 191 227
IPR002885 Pentatricopeptide_rpt TIGRFAM 404 437
IPR002885 Pentatricopeptide_rpt TIGRFAM 686 718
IPR002885 Pentatricopeptide_rpt TIGRFAM 544 578
IPR002885 Pentatricopeptide_rpt TIGRFAM 333 366
IPR002885 Pentatricopeptide_rpt TIGRFAM 158 190
IPR002885 Pentatricopeptide_rpt TIGRFAM 473 507
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 226 260
IPR002885 Pentatricopeptide_rpt Pfam 153 201
IPR002885 Pentatricopeptide_rpt Pfam 682 728
IPR002885 Pentatricopeptide_rpt Pfam 402 448
IPR002885 Pentatricopeptide_rpt Pfam 330 378
IPR002885 Pentatricopeptide_rpt Pfam 541 590
IPR002885 Pentatricopeptide_rpt Pfam 225 274
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 471 505
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 542 576
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 331 365
IPR002885 Pentatricopeptide_rpt Pfam 607 639
IPR002885 Pentatricopeptide_rpt Pfam 466 498
IPR002885 Pentatricopeptide_rpt Pfam 506 532
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 717 751
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 577 611
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 118 152
IPR002885 Pentatricopeptide_rpt Pfam 298 328
IPR002885 Pentatricopeptide_rpt Pfam 650 674
IPR002885 Pentatricopeptide_rpt Pfam 121 147
IPR011990 TPR-like_helical_dom_sf Gene3D 664 816
IPR011990 TPR-like_helical_dom_sf Gene3D 19 178
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 296 330
IPR011990 TPR-like_helical_dom_sf Gene3D 489 643
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 507 541
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 153 188
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 436 470
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 366 400
IPR011990 TPR-like_helical_dom_sf Gene3D 179 277
IPR011990 TPR-like_helical_dom_sf Gene3D 382 488
IPR011990 TPR-like_helical_dom_sf Gene3D 278 381
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 682 716

No CAZYmes available for this sequence

No external refs found!