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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0009242 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009242_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G448100.1 | No neighbors in network |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G448100.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_100 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 227 | 261 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 262 | 296 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 192 | 226 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 121 | 170 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 473 | 521 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 191 | 240 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 261 | 308 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 369 | 417 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 445 | 469 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 547 | 575 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 85 | 111 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 281 | 397 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 466 | 602 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 508 | 542 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 122 | 156 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 398 | 465 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 546 | 578 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 299 | 326 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 124 | 158 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 406 | 438 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 264 | 298 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 371 | 405 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 159 | 193 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 476 | 509 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 336 | 369 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 230 | 262 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 194 | 228 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 510 | 544 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 331 | 361 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 404 | 438 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 334 | 368 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 473 | 507 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 157 | 191 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 83 | 114 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 173 | 280 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 43 | 172 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 297 | 331 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 543 | 577 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 369 | 403 |
No CAZYmes available for this sequence
| No external refs found! |