Bradi2g60817.1

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG_01_0005530 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005530_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi2g60817.1
Cluster	Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_104

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	ISM	GOs from InterProScan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	164	450
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	323	457
IPR001680	WD40_rpt	SMART	326	365
IPR001680	WD40_rpt	SMART	284	323
IPR001680	WD40_rpt	SMART	241	281
IPR001680	WD40_rpt	SMART	368	408
IPR001680	WD40_rpt	SMART	411	451
IPR001680	WD40_rpt	SMART	153	197
IPR001680	WD40_rpt	SMART	200	239
IPR001680	WD40_rpt	Pfam	205	238
IPR001680	WD40_rpt	Pfam	250	281
IPR001680	WD40_rpt	Pfam	286	323
IPR001680	WD40_rpt	Pfam	420	450
IPR001680	WD40_rpt	Pfam	328	365
IPR001680	WD40_rpt	Pfam	371	407
IPR001680	WD40_rpt	ProSiteProfiles	207	239
IPR001680	WD40_rpt	ProSiteProfiles	165	197
IPR001680	WD40_rpt	ProSiteProfiles	291	332
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	142	322
IPR001680	WD40_rpt	ProSiteProfiles	249	290
IPR019775	WD40_repeat_CS	ProSitePatterns	310	324
IPR001680	WD40_rpt	ProSiteProfiles	419	450
IPR045245	Pfs2-like	PANTHER	63	714
IPR001680	WD40_rpt	ProSiteProfiles	333	374
IPR001680	WD40_rpt	ProSiteProfiles	375	407

No CAZYmes available for this sequence

External Links

No external refs found!