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  5. Sevir.3G010600.1

Sevir.3G010600.1


Description : pentatricopeptide (PPR) repeat-containing protein


Gene families : OG_01_0009913 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009913_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G010600.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G010600.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_126
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_46


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 257 291
IPR000504 RRM_dom SMART 115 191
IPR035979 RBD_domain_sf SUPERFAMILY 106 219
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 292 326
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 537 571
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 467 501
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 308 747
IPR002885 Pentatricopeptide_rpt Pfam 365 394
IPR002885 Pentatricopeptide_rpt Pfam 400 429
IPR002885 Pentatricopeptide_rpt Pfam 501 549
IPR002885 Pentatricopeptide_rpt Pfam 431 478
IPR002885 Pentatricopeptide_rpt Pfam 571 619
IPR011990 TPR-like_helical_dom_sf Gene3D 231 356
IPR011990 TPR-like_helical_dom_sf Gene3D 551 656
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 362 396
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 502 536
IPR033443 PPR_long Pfam 647 790
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 712 746
IPR002885 Pentatricopeptide_rpt TIGRFAM 434 467
IPR002885 Pentatricopeptide_rpt TIGRFAM 750 783
IPR002885 Pentatricopeptide_rpt TIGRFAM 714 748
IPR002885 Pentatricopeptide_rpt TIGRFAM 470 502
IPR002885 Pentatricopeptide_rpt TIGRFAM 505 537
IPR002885 Pentatricopeptide_rpt TIGRFAM 540 572
IPR002885 Pentatricopeptide_rpt TIGRFAM 609 643
IPR002885 Pentatricopeptide_rpt TIGRFAM 295 327
IPR002885 Pentatricopeptide_rpt TIGRFAM 644 677
IPR002885 Pentatricopeptide_rpt TIGRFAM 365 394
IPR002885 Pentatricopeptide_rpt TIGRFAM 680 713
IPR002885 Pentatricopeptide_rpt TIGRFAM 575 608
IPR002885 Pentatricopeptide_rpt TIGRFAM 264 293
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 572 606
IPR000504 RRM_dom Pfam 116 188
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 432 466
IPR000504 RRM_dom ProSiteProfiles 114 195
IPR002885 Pentatricopeptide_rpt Pfam 281 338
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 642 676
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 95 230
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 747 781
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 677 711
IPR011990 TPR-like_helical_dom_sf Gene3D 657 852
IPR011990 TPR-like_helical_dom_sf Gene3D 365 550
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 607 641

No CAZYmes available for this sequence

No external refs found!