Bradi3g00980.2

Description : U5 small nuclear ribonucleoprotein helicase

Gene families : OG_01_0004284 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004284_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi3g00980.2
Cluster	Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_104

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	522	696
IPR036388	WH-like_DNA-bd_sf	Gene3D	1762	1858
IPR001650	Helicase_C	SMART	809	897
IPR001650	Helicase_C	SMART	1646	1734
IPR027417	P-loop_NTPase	Gene3D	719	920
IPR035892	C2_domain_sf	Gene3D	1218	1326
IPR027417	P-loop_NTPase	SUPERFAMILY	461	704
IPR035892	C2_domain_sf	Gene3D	2056	2176
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	1366	1533
IPR041094	Brr2_helicase_PWI	Pfam	282	389
IPR001650	Helicase_C	ProSiteProfiles	1587	1791
IPR027417	P-loop_NTPase	SUPERFAMILY	1552	1762
IPR027417	P-loop_NTPase	SUPERFAMILY	713	925
IPR004179	Sec63-dom	Pfam	1019	1319
IPR027417	P-loop_NTPase	Gene3D	1327	1556
IPR001650	Helicase_C	Pfam	752	895
IPR001650	Helicase_C	ProSiteProfiles	736	938
IPR027417	P-loop_NTPase	Gene3D	508	718
IPR036388	WH-like_DNA-bd_sf	Gene3D	927	1018
IPR014001	Helicase_ATP-bd	SMART	516	726
IPR014001	Helicase_ATP-bd	SMART	1360	1566
IPR004179	Sec63-dom	Pfam	1851	2169
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	925	1030
IPR027417	P-loop_NTPase	SUPERFAMILY	1249	1551
IPR014756	Ig_E-set	SUPERFAMILY	2058	2175
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	1762	1863
IPR003593	AAA+_ATPase	SMART	1378	1571
IPR003593	AAA+_ATPase	SMART	534	718
IPR014001	Helicase_ATP-bd	ProSiteProfiles	529	711
IPR027417	P-loop_NTPase	Gene3D	1557	1761
IPR004179	Sec63-dom	SMART	1018	1323
IPR004179	Sec63-dom	SMART	1851	2171
IPR014001	Helicase_ATP-bd	ProSiteProfiles	1373	1550

No CAZYmes available for this sequence

External Links

No external refs found!