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Description : Pentatricopeptide repeat (PPR-like) superfamily protein
Gene families : OG_01_0010425 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010425_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G009100.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G009100.1 | No neighbors in network |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_78 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 545 | 579 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 337 | 363 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 443 | 470 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 478 | 507 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 196 | 224 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 267 | 292 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 124 | 152 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 334 | 368 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 226 | 257 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 193 | 227 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 440 | 470 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 369 | 404 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 405 | 439 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 579 | 625 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 509 | 558 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 298 | 335 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 368 | 418 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 580 | 614 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 229 | 263 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 504 | 573 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 294 | 364 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 223 | 293 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 53 | 222 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 574 | 632 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 365 | 432 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 433 | 503 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 299 | 333 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 475 | 509 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 301 | 335 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 196 | 229 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 443 | 470 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 339 | 369 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 231 | 264 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 267 | 292 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 548 | 581 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 165 | 193 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 478 | 511 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 371 | 405 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 407 | 439 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 512 | 546 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 582 | 615 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 264 | 298 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 510 | 544 |
No CAZYmes available for this sequence
| No external refs found! |