Sevir.3G019800.1

Description : vacuolar protein sorting 41

Gene families : OG_01_0010347 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010347_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G019800.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G019800.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_110
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_35

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006623	protein targeting to vacuole	ISM	GOs from InterProScan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	ISM	GOs from InterProScan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	ISM	GOs from InterProScan
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	ISM	GOs from InterProScan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072665	protein localization to vacuole	None	Extended
BP	GO:0072666	establishment of protein localization to vacuole	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR045111	Vps41/Vps8	PANTHER	16	911
IPR000547	Clathrin_H-chain/VPS_repeat	Pfam	623	762
IPR011990	TPR-like_helical_dom_sf	Gene3D	551	825
IPR000547	Clathrin_H-chain/VPS_repeat	ProSiteProfiles	619	766
IPR016902	VPS41	PIRSF	2	922
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	50	304
IPR001680	WD40_rpt	ProSiteProfiles	99	129
IPR000547	Clathrin_H-chain/VPS_repeat	SMART	619	766
IPR001680	WD40_rpt	SMART	180	216
IPR001680	WD40_rpt	SMART	92	131

No CAZYmes available for this sequence

External Links

No external refs found!