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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0016349 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016349_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G020900.1 | No neighbors in network |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G020900.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_19 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 278 | 386 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 76 | 176 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 304 | 324 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 402 | 425 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 98 | 120 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 126 | 151 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 231 | 259 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 366 | 398 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 332 | 364 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 364 | 398 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 21 | 68 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 328 | 376 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 323 | 493 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 387 | 526 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 1 | 75 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 182 | 277 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 22 | 56 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 228 | 262 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 329 | 363 |
No CAZYmes available for this sequence
| No external refs found! |