- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0013180 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013180_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi3g14380.1 | |
| Cluster | Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_128 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | Pfam | 305 | 329 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 46 | 72 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 332 | 360 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 567 | 594 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 74 | 103 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 106 | 133 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 172 | 196 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 466 | 487 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 136 | 162 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 363 | 390 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 392 | 426 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 197 | 225 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 72 | 106 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 492 | 541 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 391 | 439 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 228 | 276 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 493 | 527 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 198 | 232 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 498 | 528 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 106 | 133 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 46 | 73 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 200 | 231 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 172 | 197 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 568 | 594 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 332 | 360 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 394 | 428 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 363 | 389 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 231 | 264 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 74 | 102 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 136 | 161 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 41 | 71 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 330 | 364 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 134 | 168 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 491 | 669 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 362 | 490 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 168 | 250 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 37 | 99 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 100 | 167 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 277 | 361 |
No CAZYmes available for this sequence
| No external refs found! |