Bradi3g16660.1

Description : RNA polymerase II large subunit

Gene families : OG_01_0007077 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007077_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi3g16660.1
Cluster	Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_104

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0006366	transcription by RNA polymerase II	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR007081	RNA_pol_Rpb1_5	Pfam	826	1416
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1692	1698
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1685	1691
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1706	1712
IPR044893	RNA_pol_Rpb1_clamp_domain	Gene3D	4	128
IPR044893	RNA_pol_Rpb1_clamp_domain	Gene3D	268	316
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1671	1677
IPR045867	DNA-dir_RpoC_beta_prime	PANTHER	1	1567
IPR000684	RNA_pol_II_repeat_euk	Pfam	1623	1636
IPR000684	RNA_pol_II_repeat_euk	Pfam	1595	1608
IPR000684	RNA_pol_II_repeat_euk	Pfam	1609	1622
IPR000684	RNA_pol_II_repeat_euk	Pfam	1707	1720
IPR000684	RNA_pol_II_repeat_euk	Pfam	1787	1800
IPR000684	RNA_pol_II_repeat_euk	Pfam	1749	1762
IPR000684	RNA_pol_II_repeat_euk	Pfam	1651	1664
IPR000684	RNA_pol_II_repeat_euk	Pfam	1665	1678
IPR000684	RNA_pol_II_repeat_euk	Pfam	1567	1580
IPR000684	RNA_pol_II_repeat_euk	Pfam	1637	1650
IPR000684	RNA_pol_II_repeat_euk	Pfam	1735	1748
IPR000684	RNA_pol_II_repeat_euk	Pfam	1721	1734
IPR000684	RNA_pol_II_repeat_euk	Pfam	1782	1793
IPR000684	RNA_pol_II_repeat_euk	Pfam	1693	1706
IPR000684	RNA_pol_II_repeat_euk	Pfam	1679	1692
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1793	1799
IPR038120	Rpb1_funnel_sf	Gene3D	687	805
IPR042102	RNA_pol_Rpb1_3_sf	Gene3D	529	682
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1622	1628
IPR038593	RNA_pol_Rpb1_7_sf	Gene3D	1161	1296
IPR007066	RNA_pol_Rpb1_3	Pfam	525	688
IPR007075	RNA_pol_Rpb1_6	Pfam	892	1076
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1748	1754
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1636	1642
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1629	1635
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1741	1747
IPR000722	RNA_pol_asu	Pfam	353	521
IPR007073	RNA_pol_Rpb1_7	Pfam	1161	1295
IPR007080	RNA_pol_Rpb1_1	Pfam	14	351
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1720	1726
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1786	1792
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1713	1719
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1678	1684
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1823	1829
IPR007083	RNA_pol_Rpb1_4	Pfam	714	819
IPR006592	RNA_pol_N	SMART	243	549

No CAZYmes available for this sequence

External Links

No external refs found!

Bradi3g16660.1

Expression Profile

Co-expression Networks

Functional Annotation