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  5. Bradi3g18572.2

Bradi3g18572.2


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0003152 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003152_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi3g18572.2
Cluster Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_128


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 414 448
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 484 518
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 659 693
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 554 588
IPR011990 TPR-like_helical_dom_sf Gene3D 190 302
IPR011990 TPR-like_helical_dom_sf Gene3D 33 189
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 449 483
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 274 308
IPR002885 Pentatricopeptide_rpt Pfam 381 411
IPR002885 Pentatricopeptide_rpt Pfam 523 548
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 166 201
IPR011990 TPR-like_helical_dom_sf Gene3D 672 789
IPR011990 TPR-like_helical_dom_sf Gene3D 585 671
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 133 619
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 624 658
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 344 378
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 729 763
IPR011990 TPR-like_helical_dom_sf Gene3D 443 511
IPR011990 TPR-like_helical_dom_sf Gene3D 512 584
IPR011990 TPR-like_helical_dom_sf Gene3D 303 372
IPR011990 TPR-like_helical_dom_sf Gene3D 373 442
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 694 728
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 589 623
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 239 273
IPR002885 Pentatricopeptide_rpt Pfam 694 740
IPR002885 Pentatricopeptide_rpt Pfam 413 462
IPR002885 Pentatricopeptide_rpt Pfam 308 357
IPR002885 Pentatricopeptide_rpt Pfam 166 214
IPR002885 Pentatricopeptide_rpt Pfam 239 287
IPR002885 Pentatricopeptide_rpt Pfam 630 672
IPR002885 Pentatricopeptide_rpt Pfam 554 602
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 309 343
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 379 413
IPR002885 Pentatricopeptide_rpt TIGRFAM 522 554
IPR002885 Pentatricopeptide_rpt TIGRFAM 662 694
IPR002885 Pentatricopeptide_rpt TIGRFAM 591 624
IPR002885 Pentatricopeptide_rpt TIGRFAM 487 518
IPR002885 Pentatricopeptide_rpt TIGRFAM 381 414
IPR002885 Pentatricopeptide_rpt TIGRFAM 452 484
IPR002885 Pentatricopeptide_rpt TIGRFAM 697 730
IPR002885 Pentatricopeptide_rpt TIGRFAM 311 345
IPR002885 Pentatricopeptide_rpt TIGRFAM 732 764
IPR002885 Pentatricopeptide_rpt TIGRFAM 417 450
IPR002885 Pentatricopeptide_rpt TIGRFAM 346 379
IPR002885 Pentatricopeptide_rpt TIGRFAM 626 658
IPR002885 Pentatricopeptide_rpt TIGRFAM 557 590
IPR002885 Pentatricopeptide_rpt TIGRFAM 276 309
IPR002885 Pentatricopeptide_rpt TIGRFAM 133 166
IPR002885 Pentatricopeptide_rpt TIGRFAM 171 203
IPR002885 Pentatricopeptide_rpt TIGRFAM 241 275
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 131 165
IPR002885 Pentatricopeptide_rpt Pfam 130 155
IPR002885 Pentatricopeptide_rpt Pfam 479 508
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 519 553

No CAZYmes available for this sequence

No external refs found!