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  5. Sevir.3G040600.2

Sevir.3G040600.2


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0010624 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010624_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G040600.2
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G040600.2
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_50
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_33


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 105 139
IPR002885 Pentatricopeptide_rpt TIGRFAM 110 141
IPR002885 Pentatricopeptide_rpt TIGRFAM 208 241
IPR002885 Pentatricopeptide_rpt TIGRFAM 177 205
IPR002885 Pentatricopeptide_rpt Pfam 81 99
IPR002885 Pentatricopeptide_rpt Pfam 7 34
IPR002885 Pentatricopeptide_rpt Pfam 110 136
IPR011990 TPR-like_helical_dom_sf Gene3D 259 383
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 206 240
IPR002885 Pentatricopeptide_rpt Pfam 205 253
IPR011990 TPR-like_helical_dom_sf Gene3D 157 258
IPR011990 TPR-like_helical_dom_sf Gene3D 55 156
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 5 35
IPR011990 TPR-like_helical_dom_sf Gene3D 1 53
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 175 205

No CAZYmes available for this sequence

No external refs found!