Bradi3g31900.2

Description : RNA recognition motif (RRM)-containing protein

Gene families : OG_01_0001524 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001524_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi3g31900.2
Cluster	Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_65

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR008942	ENTH_VHS	SUPERFAMILY	430	571
IPR006569	CID_dom	Pfam	435	563
IPR003034	SAP_dom	ProSiteProfiles	622	656
IPR006569	CID_dom	ProSiteProfiles	428	573
IPR000504	RRM_dom	SMART	174	250
IPR035967	SWAP/Surp_sf	Gene3D	295	377
IPR006569	CID_dom	SMART	435	570
IPR035967	SWAP/Surp_sf	SUPERFAMILY	297	377
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	90	256
IPR000061	Surp	Pfam	320	372
IPR013170	mRNA_splic_Cwf21_dom	Pfam	801	844
IPR000061	Surp	SMART	320	374
IPR000504	RRM_dom	Pfam	175	248
IPR013170	mRNA_splic_Cwf21_dom	SMART	798	847
IPR000061	Surp	ProSiteProfiles	322	365
IPR000504	RRM_dom	ProSiteProfiles	173	254
IPR035009	SR140_RRM	CDD	172	255
IPR008942	ENTH_VHS	Gene3D	429	575
IPR035979	RBD_domain_sf	SUPERFAMILY	166	263

No CAZYmes available for this sequence

External Links

No external refs found!