1. Home
  2. Species
  3. Setaria viridis
  4. Sequence
  5. Sevir.3G063300.1

Sevir.3G063300.1


Description : phragmoplastin interacting protein 1


Gene families : OG_01_0011976 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011976_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G063300.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G063300.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_7
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_108


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036875 Znf_CCHC_sf SUPERFAMILY 444 511
IPR036875 Znf_CCHC_sf SUPERFAMILY 540 571
IPR001878 Znf_CCHC ProSiteProfiles 494 509
IPR034362 PHIP1_RRM2 CDD 286 356
IPR036875 Znf_CCHC_sf SUPERFAMILY 377 425
IPR000504 RRM_dom ProSiteProfiles 192 269
IPR001878 Znf_CCHC Pfam 406 423
IPR001878 Znf_CCHC Pfam 552 569
IPR001878 Znf_CCHC Pfam 449 466
IPR001878 Znf_CCHC Pfam 382 399
IPR001878 Znf_CCHC Pfam 608 625
IPR001878 Znf_CCHC Pfam 492 509
IPR001878 Znf_CCHC ProSiteProfiles 406 423
IPR036875 Znf_CCHC_sf SUPERFAMILY 595 626
IPR001878 Znf_CCHC ProSiteProfiles 610 625
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 154 278
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 281 370
IPR001878 Znf_CCHC ProSiteProfiles 451 466
IPR001878 Znf_CCHC ProSiteProfiles 552 569
IPR001878 Znf_CCHC ProSiteProfiles 384 399
IPR000504 RRM_dom SMART 193 265
IPR000504 RRM_dom SMART 286 357
IPR035979 RBD_domain_sf SUPERFAMILY 184 275
IPR001878 Znf_CCHC SMART 407 423
IPR001878 Znf_CCHC SMART 553 569
IPR001878 Znf_CCHC SMART 383 399
IPR001878 Znf_CCHC SMART 493 509
IPR001878 Znf_CCHC SMART 609 625
IPR001878 Znf_CCHC SMART 450 466
IPR000504 RRM_dom ProSiteProfiles 285 361
IPR034361 PHIP1_RRM1 CDD 194 265
IPR035979 RBD_domain_sf SUPERFAMILY 284 372
IPR000504 RRM_dom Pfam 194 262
IPR000504 RRM_dom Pfam 288 354

No CAZYmes available for this sequence

No external refs found!