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Description : pumilio 2
Gene families : OG_01_0007041 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007041_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G067800.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G067800.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_123 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_67 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR033133 | PUM-HD | ProSiteProfiles | 515 | 855 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 756 | 789 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 653 | 677 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 576 | 605 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 539 | 573 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 802 | 829 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 611 | 644 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 683 | 718 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 721 | 754 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 752 | 787 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 607 | 642 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 716 | 751 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 679 | 715 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 794 | 829 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 535 | 570 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 571 | 606 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 643 | 678 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 752 | 787 |
| IPR012940 | NABP | Pfam | 215 | 340 |
| IPR012940 | NABP | Pfam | 316 | 534 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 607 | 642 |
| IPR033712 | Pumilio_RNA-bd | CDD | 530 | 851 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 716 | 751 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 571 | 606 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 643 | 678 |
| IPR011989 | ARM-like | Gene3D | 516 | 861 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 788 | 829 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 679 | 715 |
| IPR016024 | ARM-type_fold | SUPERFAMILY | 517 | 852 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 535 | 570 |
No CAZYmes available for this sequence
| No external refs found! |